Transforming JSON into a Python dictionary after importing Postgresql data using SQLAlchemy

I'm facing a challenging issue with converting JSON strings to Python data dictionaries for analysis in Pandas. Despite researching other solutions, I haven't found one that works for my specific case.

In the past, I relied on CSVs and the read_csv function in Pandas for my analysis. However, I've now transitioned to extracting data directly from PostgreSQL.

Using SQLAlchemy to connect to my engine and execute queries is not a problem. My entire script functions smoothly until it reaches the point where I need to convert a column (specifically, the 'config' column in the example below) from JSON to a Python dictionary. The objective of this conversion is to count the number of responses under the "options" field within the "config" column.

df = pd.read_sql_query('SELECT questions.id, config from questions ', engine)

df = df['config'].apply(json.loads)

df = pd.DataFrame(df.tolist())

df['num_options'] = np.array([len(row) for row in df.options])

Executing this code results in the error message "TypeError: expected string or buffer". Attempting to convert the 'config' column data from object to string did not resolve the issue (another error occurred, such as "ValueError: Expecting property name...").

For reference, here's a snippet of data from a single cell in the 'config' column (the code should return '6' in this instance as there are 6 options):

{"graph_by":"series","options":["Strongbow Case Card/Price Card","Strongbow Case Stacker","Strongbow Pole Topper","Strongbow Base wrap","Other Strongbow POS","None"]}

My suspicion is that SQLAlchemy manipulates JSON strings in a way different from when handling CSV data. This discrepancy could explain the unexpected errors I encounter.

Answer №1

Recent updates in Psycopg now allow for seamless adaptation of Postgresql json(b) to Python. Psycopg is the designated SQLAlchemy driver for Postgresql.

df = df['config']['options']

According to the Psycopg documentation:

Psycopg has the capability to convert Python objects to/from PostgreSQL json and jsonb types. This feature is readily available with PostgreSQL 9.2 and later versions. For older database versions, including those using the 9.1 json extension or even for converting text fields to JSON, you can utilize the register_json() function.

Answer №2

Here is an example of using the SQLAlchemy query:

q = session.query(
    Question.id,
    func.jsonb_array_length(Question.config["options"]).label("len")
)

Alternatively, you can use pure SQL with pandas' read_sql_query:

sql = """\
SELECT  questions.id,
        jsonb_array_length(questions.config -> 'options') as len
FROM    questions
"""
df = pd.read_sql_query(sql, engine)

For my favorite method, combine both approaches:

# reuse `q` from the previous code block
df = pd.read_sql(q.statement, q.session.bind)

Similar questions

If you have not found the answer to your question or you are interested in this topic, then look at other similar questions below or use the search

The POST request did not yield an HttpResponse object; instead, it returned None

When I submit a selection from a dropdown form to views as a POST request, and then use this selection to query data from Django, I encounter an issue while trying to map Django models data to Highcharts following this approach. The error message "the view ...

Deactivate the default file name JSON schema link

Currently, I am working on Visual Studio Code version 1.60.1. Within my project, there are multiple files named project.json, for which I have created a customized JSON schema. Initially, I had specified my schema using the $schema field directly within t ...

What methods can I use to gauge the loading time of an AJAX request and showcase a loading panel?

I am facing an issue with my AJAX request that sometimes deals with a large JSON object. I need to display a loading panel during this process, similar to the one shown in the image below (scaled at 45%): https://i.stack.imgur.com/rw9ft.jpg The problem I ...

Flask does not accept user input directly from WTForms

I am currently working on developing an application using Flask with WTForms. Here is the setup in my controller.py file: @mod_private.route('/portfolio/', methods=['GET', 'POST']) @login_required def portfolio(): print " ...

Exploring the Nested JSON Data Loop with *ngFor in Angular 5/4

Recently I started working with Angular, and I've created a service to iterate over nested JSON data for my list. export const CATEGORIES: Category[] = [ { id: 1, categoryName:'Accessories', subcatName: [ {subcategory: & ...

Converting synchronous Python methods into asynchronous tasks

Have you heard of the Task.Run method in C# that accepts a delegate as a parameter and returns a task that can be awaited? Check it out here. Now, I'm wondering if there is a similar feature in Python's asyncio module. I have a synchronous bloc ...

PHP - JSON does not create any output

I have developed a code that displays all the appointments I have for the day. The calendar layout is already set up. However, when I try to run the program using Python, it doesn't function as intended. Here is my code: <?php mysql_connect(dele ...

How to combine data frames using multiple intervals

Looking for a solution similar to this question: Fastest way to merge pandas dataframe on ranges However, I have multiple ranges to take into account during the merging process. I possess a dataframe labeled A: ip_address server_port 0 13 ...

Converting XML attributes to JSON using Java

Having a bit of trouble converting an XML file with attributes to JSON. Specifically, there is an issue with the BvdState attribute that is causing the conversion to fail. Not quite sure what steps to take in order to resolve this issue. <State> ...

What are the steps to create a JSON file structured in a tree format?

Can you provide instructions on creating a JSON file in the following tree format? root child1 child11 child2 child21 child22 child3 child31 I am looking to generate a sample JSON file that adheres to the ...

Automatically installing packages in Python

Currently, I am encountering an issue with Python. After creating my script, I downloaded a library and installed it on my Ubuntu system to use in the script. However, when giving the script to a client or another user, they may not know which libraries ar ...

Should you create an archive - Retain outcomes or retrieve them whenever needed?

I am currently developing a project that allows users to input SQL queries with parameters. These queries will be executed at specified intervals determined by the user (e.g., every 2 hours for 6 months), and the results will be sent to their email address ...

Utilize JSON categories to assign groups to TextFields or Selects according to a JSON data attribute

I have retrieved multiple JSON groups from an API, each containing one or more questions objects. My goal is to display each question along with its corresponding response in a MUI TextField or Select component, based on the value of QuestionType. Current ...

When attempting to access the length of a JSON array, it results in undefined

I recently received a JSON encoded array from an AJAX call that looks like this: {"country":{"0":"United States of America","United States of America":{"states":{"0":"Alaska","Alaska":{"cities":["Adak","Akiachak","Akiak","Akutan","Alakanuk"]}}}}} Below ...

Python script for extracting data from live YouTube chats

I am attempting to extract chat messages from YouTube live chat. Initially, I tried a method outlined in "https://www.youtube.com/watch?v=W2DS6wT6_48" Unfortunately, the code did not function as expected. An error message was generated: all_comments = d ...

When conducting mobile browser automation testing using Python and Appium, it is essential to provide URI and package arguments

I am currently facing an issue while trying to automate mobile browser tasks using Python and Appium. Despite providing all the necessary desired capabilities, when I run the script I encounter the following error message: selenium.common.exceptions.WebDri ...

exploring the differences between beautifulsoup and re when conducting searches using regular expressions

When using urllib2.urlopen to fetch the source code of websites like this one, I decode the bytes and extract the code marked as applet using beautifulsoup. The code snippet may contain lines such as: <param name="G_00" value="espacio='E1' ti ...

Display and conceal various elements in Vue.js using a data list

I'm a beginner in Vue.js, currently using Vue+Webpack. I am trying to make each link display data based on their respective ids when clicked, and match with the show attribute. I have created this functionality in a .vue file. export default { el ...

Locate and retrieve all the records that contain an asterisk symbol in MongoDB

Could someone provide assistance with finding documents in MongoDB that contain the '*' character using regex? For example, the following regex (db.collection.find{value: new Regex('*')}) should retrieve all documents with '*&apos ...

Bug in RestEasy where Jettison is not correctly handling single element arrays

Problem description: RestEasy with Jettison When the array contains two elements, the format is: {"MyArray" : {"Array" : [{"a" : 1, "b" : 2}, {"a" : 3, "b" : 4}]}} However, when the array has a single element, the format is: {"MyArray" : {"Array" : {"a ...