Questions tagged [biopython]

Biopython offers a collection of open-source tools designed for biological analysis using the Python programming language. This tag should only be used for inquiries specifically related to the Biopython tool suite.

Issue encountered: Module not found error persists even though the module is installed and appears in the list generated by pip

After installing biopython and related modules, I attempted to load them with the following code: from BCBio.GFF import GFFExaminer import pprint from BCBio import GFF However, I encountered the following error: ----------------------------------------- ...

Utilizing Python's Selenium library to select data from a dropdown menu on HHPRED

Struggling to navigate the drop-down menu on the HHPRED website, I keep encountering 'object not found' or 'object not clickable/selectable' errors. (Website URL: ) # Inputting protein from a text file (using predator_file variable) text_area = driver.fin ...

"Troubleshooting Issues with NCBI's blastp Command Line Tool

My goal is to automate the process of performing blast outputs from multiple files within a directory. While the variables are currently hardcoded, they will eventually be defined by users. The plan involves changing the input files through a loop in Pytho ...

Can anyone share the step-by-step process for setting up a dictionary that automatically populates with the necessary sample ID's?

Recently, I've dedicated time to developing a code that streamlines a lab process through automation. In essence, the code is designed to extract experiment data, compile it into a file, and transmit it to the website host for storage. However, I&apos ...