Questions tagged [bioinformatics]
If you have any questions about programming in the field of Bioinformatics, feel free to ask here. Any other unrelated questions should be directed to bioinformatics where they may be more relevant.
My goal is to automate the process of performing blast outputs from multiple files within a directory. While the variables are currently hardcoded, they will eventually be defined by users. The plan involves changing the input files through a loop in Pytho ...
I have two files: one is a .vcf file containing information about variants, and the other is a .bed file containing details about the regions studied. I am utilizing the pyranges library to read the .bed file. My goal is to filter out all variants in the . ...
After installing biopython and related modules, I attempted to load them with the following code: from BCBio.GFF import GFFExaminer import pprint from BCBio import GFF However, I encountered the following error: ----------------------------------------- ...
Recently, I've been exploring a new bioinformatics tool known as Giggle and successfully set up the python wrapper on my system. Despite the specific nature of my current situation, I believe the issue at hand is quite common. index = Giggle.create(" ...