Questions tagged [vcf-variant-call-format]

The VCF, or Variant Call Format, is a specific file format utilized in the field of bioinformatics to store genetic sequence variations. It is important to note that this tag should not be associated with the vCard file format which is used for electronic business cards. For detailed documentation on the VCF format, please refer to the following link:

How can one determine if a genomic position falls within any interval using the pyranges library?

I have two files: one is a .vcf file containing information about variants, and the other is a .bed file containing details about the regions studied. I am utilizing the pyranges library to read the .bed file. My goal is to filter out all variants in the . ...

pythonbioinformaticsvcf-variant-call-formatpyranges